When running a convoy mission, a trident I was guarding entered a storm system. Another trident and a teradon both from different convoys enterd the storm nearly simultaniously.
The result: 3 intersecting capships lossing hull.

Then they jumped out, and entered the next sector STILL INTERSECTING!
Same for the next warp

As you can guess I failed that mission.

A bot took of the last few hit points the collisions had missed.

This is something we hope to address in the very near future since, not only does it suck for the players, intersecting ships use a *lot* of cpu and bog down their sector and whatever others are sharing cpu with it. Thanks for the report :)